Single Cell Data Analysis
Made Simple
Our integrated analysis ecosystem combines innovative technology, flexible tools, and intuitive platforms to accelerate your research—from raw reads to biological insight.
Flexible, Open-Source Pipeline
Harness the power of a fully configurable, open-source Nextflow-based analysis pipeline. Whether you’re running on local infrastructure, high-performance computing (HPC), or cloud platforms, our pipeline ensures seamless scalability, reproducible results, and full transparency and customization
Available for download from our GitHub Repository and ready for local or cloud deployment.
Cloud-Ready with Seqera Platform Integration
Launch your pipeline in seconds with Seqera Platform integration. Enjoy a streamlined, intuitive interface for managing complex workflows at scale—without worrying about infrastructure setup.
Compatible with Leading Bioinformatics Platforms
Configure and run our pipeline on one of three industry-leading bioinformatics platforms with a few clicks of a button. It’s as easy as making an account and uploading your sequencing files. Intuitive user interfaces make analysis of your outputs just as easy. Choose from no-code, low-code GUI-directed analyses, or run your own or pre-curated scripts to get the most out of your data. Offering ultimate flexibility there’s an analytical solution for everyone.
Seamless Downstream Analysis
Our pipeline outputs analysis-ready count tables that plug directly into:
- Seurat (R-based)
- Scanpy (Python-based)
Enabling fast, flexible downstream analysis like clustering, trajectory inference, or differential expression with analytical workflows your team already knows and trusts.
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Technology
Discover how SimpleCell 3′ Gene Express can accelerate your single cell research with seamless integration into your lab and cost-efficient scalability.
